Resources

Browse and filter the complete testate amoeba publication database.

Loading…
Download: Full DB
Search:
Author:
Filter publications
Year
Themes
Habitat
Methods
Geographic scope
Study type
Study focus
Geological period
Journal
Publication type
Open Open access
Testate amoebae as indicators of critical transitions in historical forest management: A case study of Scots pine monoculture
Tipton J., Marcisz K., Łuców D., Obremska M., Lamentowicz M. 2026 · The Holocene
Testate amoebae as indicators of critical transitions in historical forest management: A case study of Scots pine monoculture
Tipton J., Marcisz K., Łuców D., Obremska M., Lamentowicz M.
2026 · The Holocene · Vol. 36, Issue 5-6, pp. 638-649
Download PDF DOI Publisher page Cited by 2 ?

Abstract

Peatlands are susceptible not only to direct disturbance, but also to indirect changes in their surroundings, including land management. Changes in agricultural practices or forest management can significantly influence peatland functioning, for example, their trophic status or surface vegetation. Here, we investigate the effects of planned forestry on two Sphagnum -dominated peatlands in northern Poland’s Tuchola Forest. We use testate amoebae and compare them to available pollen and historical data to reconstruct past environmental conditions and assess anthropogenic pressure. The Tuchola Forest has undergone significant transformations as a result of human activities, notably during Prussia’s promotion of pine monoculture in the 19th century. We hypothesized that forest management activities and other related disturbances have led to wetland acidification and water table alterations. Our results show that these changes have had profound effects on both peatlands. Radiocarbon dating revealed a correlation between forest management practices and peatland dynamics. Quantitative reconstructions based on testate amoebae showed that, as a result of the introduced pine monoculture, both peatlands experienced rapid acidification (pH levels dropping from ca. 6.2 to 3.5) and water table lowering of over 15 cm. The predominance of pine monoculture has not only reduced biodiversity but also enhanced the susceptibility of the forest to fires and pest outbreaks, further affecting peatland conditions. These findings contribute to understanding of how historical land-use changes continue to influence present-day peatland dynamics, offering insights into restoration and conservation efforts in forested peatland landscapes.
Themes
PalaeoecologyEcology & BiomonitoringHolocene reconstructionSediment core analysisVegetation & land use historyMulti-proxy studiesEnvironmental driversWater quality assessmentEcological indicators
Habitat
PeatlandOmbrotrophic bogPeatland forestImpacted peatland
Methods
MorphologicalTransfer functionsMulti-method
Geographic scope
Europe
Study type
In situMulti-approach
Study focus
Paleoclimate & water table reconstructionCommunity ecologyBioindication
Geological period
Holocene
Keywords
Bioindication; Historical data; Palaeoecology; Peatland; Pinus sylvestris; Poland; Sphagnum
Open Open access
Quaternary Ice Ages Shaped Protists Phylogeography: The Case of Arcellinida in the Iberian Peninsula
González-Miguéns R., Cano E., Lara E. 2026 · Molecular Ecology
Quaternary Ice Ages Shaped Protists Phylogeography: The Case of Arcellinida in the Iberian Peninsula
González-Miguéns R., Cano E., Lara E.
2026 · Molecular Ecology · Vol. 35, Issue 14
Download PDF DOI Publisher page Cited by 1 ?

Abstract

The Quaternary glaciations profoundly shaped the biogeography of plants and animals, yet their impact on microbial eukaryotes remains largely unexplored. We tested the “genetic legacy of the Quaternary” (GLQ) paradigm in terrestrial protists using Arcellinida testate amoebae diversity distribution across the Iberian Peninsula, a well‐established glacial refugium. To do so, we compiled the most extensive Arcellinida metabarcoding dataset to date (ArKOI), including 615 samples from multiple continents and ecosystems. Our results showed that hotspots of intra‐OTU genetic diversity align with known Iberian refugia, supporting the concept of “refugia within refugia,” and displaying clear ecoregion‐specific climatic niches. Patterns of spatial clustering, niche breadth, and historical demographic reconstruction revealed repeated range contractions and expansions during the Pleistocene, mirroring those observed in macro‐organisms. These findings extend the GLQ paradigm to protists, highlighting shared historical and ecological processes across the eukaryotic tree of life and contributing to a unified theory of biogeographic responses to climatic change.
Themes
PalaeoecologyTaxonomy & DiversityEvolutionBiogeographyLate QuaternaryClimate proxiesMolecular systematicsMetabarcoding & diversityCryptic diversityDistribution patternsDispersal & endemismClimate change & range shifts
Habitat
SoilTerrestrial non-soilMulti-habitat
Methods
MetabarcodingModellingMulti-method
Geographic scope
GlobalEurope
Study type
In situMulti-approach
Study focus
Paleoclimate & water table reconstructionBiodiversity assessmentEvolutionary biologyBiogeography
Geological period
PleistoceneQuaternary
Keywords
Amoebozoa; Biogeography; Evolution; Microbiology
Open Open access
Winners and Losers of Water Stress: Does the Drying Up of Peat Ponds Affect All Groups of Aquatic Organisms in the Same Way?
Mieczan T., Płaska W., Bronowicka-Mielniczuk U. 2026 · Water
Winners and Losers of Water Stress: Does the Drying Up of Peat Ponds Affect All Groups of Aquatic Organisms in the Same Way?
Mieczan T., Płaska W., Bronowicka-Mielniczuk U.
2026 · Water · Vol. 18, Issue 14, pp. 1662
Download PDF DOI Publisher page Cited by 0 ?

Abstract

Climate change models point to a possible rise in air temperature, ranging from 2 °C to 4 °C. Global changes will therefore have a particularly pronounced effect on the functioning of shallow water bodies known as peat ponds, i.e., habitats formed after peat extraction in peatlands. However, the extent of this impact is still unknown. The main objective of the study was to determine the impact of water level and water physicochemical properties on the functioning of selected groups of aquatic organisms in peat ponds of different origins. The study was conducted in spring, summer and autumn of the years 2024 and 2025, in 10 peat ponds with different trophic status and typology, located in the Polesie National Park in eastern Poland. Considerable fluctuations in water levels, resulting from a scarcity of precipitation, accelerated the drying out and overgrowth of peat ponds, particularly the alkaline and acidic types. Within the zoocoenotic communities, a significant decline in the abundance of planktonic species and an increase in the abundance of littoral or periphytic species were recorded (F = 6.24, p < 0.015). Regarding trophic structure, an increase in the abundance of mixotrophic species and a decrease in the abundance of top-level predators were observed. Hydrological changes were reflected in an increase in species richness and abundance of communities of organisms with broad ecological tolerance (mainly ciliates), and a decrease in the number of species and abundance of planktonic crustaceans and macroinvertebrates. The RDA model explains over 84% of the total variability, indicating excellent model fit to the data and a strong correlation between environmental variables and species composition. Based on p values, water level, temperature, pH, and COD were selected as significant variables, with conductivity, O2, and Ptot demonstrating less statistical significance. Peat ponds ecosystems can serve as an excellent model system for studying the impact of intensifying climate change on the functioning of shallow water bodies.
Themes
Ecology & BiomonitoringTaxonomy & DiversityCommunity ecologyEnvironmental driversAquatic ecologyFunctional ecologyWater quality assessmentEcological indicatorsLong-term monitoringMorphological diversity
Habitat
PeatlandFreshwaterImpacted peatlandOther peatlandPond
Methods
MorphologicalExperimental
Geographic scope
Europe
Study type
In situ
Study focus
Biodiversity assessmentCommunity ecologyBioindication
Keywords
Peatland; Peat ponds; Hydrology; Zooplankton; Macroinvertebrates
Open Open access
Testate amoebae as proxies of anthropogenic and natural impacts recorded in the sediments of the Upper Balma Lake (Piedmont, Italy)
Bertoli M., Salvi G., Sitta M., Pavoni E., Esposito G., Torricella F., Pastorino P., Prearo M., Pizzul E. 2026 · Quaternary Science Reviews
Testate amoebae as proxies of anthropogenic and natural impacts recorded in the sediments of the Upper Balma Lake (Piedmont, Italy)
Bertoli M., Salvi G., Sitta M., Pavoni E., Esposito G., Torricella F., Pastorino P., Prearo M., Pizzul E.
2026 · Quaternary Science Reviews · Vol. 389, pp. 110162
Download PDF DOI Publisher page Cited by 0 ?

Abstract

Testate amoebae are known among the proxies for paleolimnological investigations but, despite their recognized importance and recent findings, they have not been sufficiently studied in alpine lakes, particularly in Europe. The present study analyzes fossil testate amoeba assemblages from the Upper Balma Lake (2216 m a.s.l., Western Alps, Italy) to reconstruct ecological changes over the past 1200 years. 21 species belonging to 5 genera were identified, with Centropyxis and Difflugia being the most abundant. Multivariate statistical analyses, combined with sedimentological and geochemical data, revealed five paleoenvironmental phases corresponding to known climatic events, including the Medieval Climate Anomaly, the Little Ice Age, and the Recent Warming period. Assemblage composition and diversity were related to grain size variations, nutrient input, and trace element concentrations (e.g., As, Mn, Mo) and periods of climatic stability were associated with higher biodiversity, while cold or disturbed intervals, marked by floods or sediment reworking, resulted in reduced abundances and diversity. In recent decades, a decline was observed for the genus Centropyxis , possibly indicating reduced oxygenation and changes in contaminant levels. Comparative analysis with the Lower Balma Lake, located downstream in the same area, highlighted the influence of morphological/hydrological differences between lakes on species distributions. The findings underscore the value of testate amoebae as sensitive bioindicators and their applicability in paleoecological reconstructions of alpine lakes. This study contributes to understanding long-term ecological responses to climate change and provides insights into flood regime variability in high-mountain environments.
Themes
PalaeoecologyEcology & BiomonitoringTaxonomy & DiversityHolocene reconstructionSediment core analysisClimate proxiesMulti-proxy studiesEnvironmental driversAquatic ecologyEcological indicatorsMorphological diversity
Habitat
FreshwaterLake
Methods
MorphologicalTransfer functionsMulti-method
Geographic scope
EuropeFrance
Study type
In situMulti-approach
Study focus
Paleoclimate & water table reconstructionBiodiversity assessmentBioindication
Geological period
HoloceneQuaternary
Keywords
Climate change; High-mountain lakes; Paleolimnology; Lake sediment; Testate amoebae
Open Open access
Morphology and indicator value of non-pollen palynomorphs in Arctic ice-wedge polygon mires in NE Siberia
de Klerk P., Andreev A., Joosten H. 2026 · Review of Palaeobotany and Palynology
Morphology and indicator value of non-pollen palynomorphs in Arctic ice-wedge polygon mires in NE Siberia
de Klerk P., Andreev A., Joosten H.
2026 · Review of Palaeobotany and Palynology · Vol. 355, pp. 105704
Download PDF DOI Publisher page Cited by 0 ?

Abstract

Non-pollen palynomorphs (NPPs) are important ecological indicators and are increasingly used in the study of Arctic ice-wedge polygon mires in Siberia. This paper provides an overview of NPPs found in high-spatial-resolution (1 m sample distance) surface samples along transects crossing various polygon microtopographical elements, and in high-temporal-resolution (sample distance 0.5 cm) contiguous samples in peat profiles. Whereas algal palynomorphs - of e.g. Botryococcus, Pediastrum, and various Zygnemataceae - show a distinct presence in open water settings, testate amoebae tests - of Arcella, Assulina, and Amphitrema flavum - are typical for dry peatland settings such as polygon rims. Various other NPPs were encountered including types not yet described. The latter have been denominated using morphological terms to facilitate future identification. These types are often typical for distinct polygon microhabitats and thus have indicator values that allow the reconstruction of past ecological settings without knowing the taxa that produce them.
Themes
PalaeoecologyEcology & BiomonitoringTaxonomy & DiversityMethodological developmentHolocene reconstructionSediment core analysisVegetation & land use historyClimate proxiesEcological indicatorsMorphological diversityMorphological identification guides
Habitat
PeatlandSoilFen
Methods
Morphological
Geographic scope
EuropeAsiaRussia
Study type
In situTaxonomic description
Study focus
Paleoclimate & water table reconstructionBioindicationTaxonomy & systematics
Geological period
Holocene
Keywords
Actuoecology; Arctic; Ice-wedge polygon mires; NE Siberia; Non-pollen palynomorphs; Palaeoecology
Open Open access
Underexplored Microbiota of Testate Amoeba in Southeast Asian Ecosystems: A Systematic Review and Meta‐Analysis
Racoma C.J.M., Tomacas L.L., Dagamac N.H.A., Tekle Y.I. 2025 · Journal of Eukaryotic Microbiology
Underexplored Microbiota of Testate Amoeba in Southeast Asian Ecosystems: A Systematic Review and Meta‐Analysis
Racoma C.J.M., Tomacas L.L., Dagamac N.H.A., Tekle Y.I.
2025 · Journal of Eukaryotic Microbiology · Vol. 72, Issue 5
Download PDF DOI Publisher page Cited by 2 ?

Abstract

Single‐celled protists, such as testate amoebae, have garnered significant attention as potential bioindicators which translate into their recognition of being ecologically sensitive. They are known for their use in ecological and paleoecological studies, yet their diversity and distribution remain poorly documented in blind spot regions of the Paleotropics. This study systematically consolidates all published species records of testate amoebae, evaluates spatial research bias, and assesses regional richness from Southeast Asian countries. A comprehensive literature search was conducted across digital databases and web‐based repositories. In total, there are 497 testate amoebae belonging to 70 genera, including infra‐specific species from the 46 studies scoped in this review. Species richness curves revealed steep trajectories in under sampled countries, indicating untapped diversity. Despite geographical proximity, the seeming overlap of species per country was limited, pointing toward predominance of species turnover than nested clustering of richness. This disjunct pattern in species composition suggests the influence of potential ecological specialization or, perhaps, a mere result of uneven research effort in the unexplored regions. The research for testate amoebae has been in a progressive state, yet strong emphasis needs addressing species exploration in response to intensified climate change and degradation of habitats as these would mean potential biodiversity loss.
Themes
Ecology & BiomonitoringTaxonomy & DiversityBiogeographyCommunity ecologyEcological indicatorsMorphological diversityCryptic diversityDistribution patternsDispersal & endemism
Habitat
Multi-habitat
Methods
Morphological
Geographic scope
Asia
Study type
ReviewMeta-analysis
Study focus
Biodiversity assessmentBioindicationTaxonomy & systematicsBiogeography
Keywords
Typhoon; Drought; Deep reservoir; Testate amoeba community
Open Open access
Microfossil (Diatoms, Tintinnids, and Testate Amoebae) Assemblages in the Holocene Sediments of the Laptev Sea Shelf off the Yana River as a Proxy for Paleoenvironments
Obrezkova M.S., Vasilenko L.N., Tsoy I.B., Shi X., Hu L., Kuzmin Y.V., Kolesnik A.N., Alatortsev A.V., Mariash A.A., Lopatnikov E.A., Yurtseva I.A., Khmel D.S., Astakhov A.S. 2025 · Quaternary
Microfossil (Diatoms, Tintinnids, and Testate Amoebae) Assemblages in the Holocene Sediments of the Laptev Sea Shelf off the Yana River as a Proxy for Paleoenvironments
Obrezkova M.S., Vasilenko L.N., Tsoy I.B., Shi X., Hu L., Kuzmin Y.V., Kolesnik A.N., Alatortsev A.V., Mariash A.A., Lopatnikov E.A., Yurtseva I.A., Khmel D.S., Astakhov A.S.
2025 · Quaternary · Vol. 8, Issue 3, pp. 40
Download PDF DOI Publisher page Cited by 0 ?

Abstract

The paper presents the results of a microfossil study of Holocene sediments in the Yana River flow zone in the southeastern part of the Laptev Sea. A rich diatom flora (242 species and intraspecific taxa, of which 177 species are freshwater) was revealed; additionally, five species of marine tintinnids (planktonic ciliates) and 15 species of freshwater testate amoebae (testacean) were discovered for the first time in the sea sediments. Three assemblages of microfossils reflecting the phases of environmental changes during the Holocene transgression are distinguished in the studied sediments of core LV83-32. Assemblage 1 was formed under terrestrial conditions (assemblage of diatoms Eunotia-Pinnularia and testacean Difflugia-Cylindrifflugia-Centropyxis), assemblage 2 in the zone of mixing of sea and fresh waters (assemblages of diatoms Cyclotella striata-Aulacoseira, Thalassiosira hyperborea-Chaetoceros and T. hyperborea-Aulacoseira, testacean Cyclopyxis kahli, tintinnids Tintinnopsis fimbriata), and assemblage 3 reflects modern conditions in the inner shelf of the Laptev Sea under the strong influence of river runoff (assemblage of diatoms T. hyperborea-Aulacoseira-M. arctica and tintinnids Tintinnopsis ventricosoides). Changes in the natural environment in the coastal part of the Laptev Sea shelf during the Holocene, established by microfossil assemblages, are confirmed by geochemical data.
Themes
PalaeoecologyHolocene reconstructionSediment core analysisClimate proxiesMulti-proxy studies
Habitat
FreshwaterMarine/BrackishMulti-habitatCoastal sediment
Methods
MorphologicalMulti-method
Geographic scope
EuropeAsiaRussia
Study type
In situMulti-approach
Study focus
Paleoclimate & water table reconstructionBiodiversity assessmentTaxonomy & systematicsBiogeography
Geological period
HoloceneQuaternary
Keywords
Diatom; Tintinnids; Testate amoebae; Sediment; Holocene; Yana Delta; Laptev Sea
Open Open access
Free-Living Protozoa (Ciliates and Testate Amoebae) in the Fresh Waters of the Nakhchivan Autonomous Republic
Seyidova L.M. 2025 · Bulletin of Science and Practice
Free-Living Protozoa (Ciliates and Testate Amoebae) in the Fresh Waters of the Nakhchivan Autonomous Republic
Seyidova L.M.
2025 · Bulletin of Science and Practice · Vol. 11, Issue 1, pp. 40-44
Download PDF DOI Publisher page Cited by 1 ?

Abstract

In the period from 2017 to 2022, ciliated protozoa and testate amoebae were studied in freshwater ecosystems of the Nakhchivan Autonomous Republic. 110 species of ciliates and 65 species of amoebae were identified. The species diversity of ciliates in freshwater is almost twice as high as in soil. The differences in species diversity between aquatic and soil amoebae are relatively small. The need for standardization of the methods used by researchers is emphasized. Further studies of these groups of protozoa are necessary to obtain more accurate conclusions about their ecological role, relationships, and their importance in various biological processes.
Themes
Taxonomy & DiversityMorphological diversity
Habitat
SoilFreshwaterLakePondRiver/Stream
Methods
Morphological
Geographic scope
Asia
Study type
In situ
Study focus
Biodiversity assessmentCommunity ecology
Keywords
Infusoria; Testate amoebae; Freshwater; Soil; Azerbaijan
Open Open access
The devil is in the details: Cylindrifflugia luciferina spec. nov. reveals the phylogenetic backbone of the infraorder Cylindrothecina (Amoebozoa, Arcellinida)
Mauricio-Sánchez E., Soler-Zamora C., Lara E. 2025 · European Journal of Protistology
The devil is in the details: Cylindrifflugia luciferina spec. nov. reveals the phylogenetic backbone of the infraorder Cylindrothecina (Amoebozoa, Arcellinida)
Mauricio-Sánchez E., Soler-Zamora C., Lara E.
2025 · European Journal of Protistology · Vol. 97, pp. 126131
Download PDF DOI Publisher page Cited by 2 ?

Abstract

The application of molecular approaches has revealed an immense biodiversity of lobose testate amoebae (Amoebozoa, Tubulinea, Elardia, Arcellinida). However, most newly discovered species are difficult or impossible to differentiate morphologically from already described forms, even though they are genetically distinct. Consequently, while diversity assessments based on sequence data overtake classical estimations of Arcellinida diversity, only a handful of morphologically divergent species have been discovered recently. These species are of key importance for reconstructing the evolutionary history of Arcellinida, including both morphology and morphogenesis. Here, we describe a large and conspicuous new species, Cylindrifflugia luciferina , found in an urban pond located in the Royal Botanical Garden of Madrid, Spain . We characterize it morphologically and molecularly, together with the closely related species Cylindrifflugia elegans . Our phylogenetic reconstruction based on the SSU rRNA gene brings evidence for three main well supported and morphologically consistent clades within the infraorder Cylindrothecina. This example illustrates that the quest for new Arcellinida diversity is far from being over and even the less expected ecosystems can bring new discoveries.

Species described

  • Cylindrifflugia luciferina Mauricio-Sánchez, Soler-Zamora & Lara, 2025
Themes
Taxonomy & DiversityEvolutionSpecies descriptionMorphological diversityMolecular systematicsPhylogeneticsDNA barcodingCryptic diversityTaxonomic revisionMorphological evolution
Habitat
FreshwaterPond
Methods
MorphologicalBarcodingMulti-method
Geographic scope
Europe
Study type
In situTaxonomic description
Study focus
Biodiversity assessmentEvolutionary biologyTaxonomy & systematics
Keywords
Biodiversity; Bioprospection; Phylogeny; SSU rRNA gene; Testate amoebae
Open Open access
The sweet water amoeba species of the Nakhchivan Autonomous Republic with a shell (testacea)
Seyidova L.M. 2025 · Acta Entomology and Zoology
The sweet water amoeba species of the Nakhchivan Autonomous Republic with a shell (testacea)
Seyidova L.M.
2025 · Acta Entomology and Zoology · Vol. 6, Issue 2, pp. 286-291
Download PDF DOI Publisher page Cited by 0 ?

Abstract

This article examines the shelled amoebae of freshwater bodies. From 2017 to 2022, a total of 28 species, 2 classes, 2 orders, 7 families, and 28 genera of shelled amoebae have been identified within the Nakhchivan Autonomous Republic. As an ecological indicator, shelled amoebae are used to assess the environmental condition, particularly the level of pollution in soil and water.
Themes
Ecology & BiomonitoringTaxonomy & DiversitySoil ecologyAquatic ecologyWater quality assessmentSoil quality assessmentEcological indicatorsSpecies descriptionMorphological diversityTaxonomic revision
Habitat
SoilFreshwater
Methods
Morphological
Geographic scope
Asia
Study type
In situTaxonomic description
Study focus
Biodiversity assessmentBioindicationTaxonomy & systematicsBiogeography
Keywords
Testate amoebae; Species; Bioindicators; Protozoa; Faunistic analysis; Protists